Installation

cellflow requires Python version >= 3.11 to run.

PyPI

Install cellflow by running:

pip install cellflow-tools

Installing rapids-singlecell and cuml:

While it’s not necessary to install cellflow with rapids-singlecell and cuml, it is recommended to do so for faster preprocessing or downstream functions. To install cellflow with rapids-singlecell and cuml, please refer to instructions how to install rapids.

Development version

To install cellflow from GitHub, run:

pip install git+https://github.com/theislab/CellFlow.git@main