cellflow.external.CFJaxSCVI.setup_anndata

classmethod CFJaxSCVI.setup_anndata(adata, layer=None, batch_key=None, **kwargs)[source]

Set up AnnData for use with CFJaxSCVI.

Parameters:

  • adata (AnnData) – AnnData object.

  • layer (str | None) – Key for layers to use as expression data.

  • batch_key (str | None) – Key for obs to use as batch information.